11th EBM PROGRAM
September 19th,
08h00 09h20
Registration, poster installation and « Welcome Coffee »
09h20 – 09h30
Introduction
Comparative genomics and post-genomics
Chairman: Sylvia Hagemann
09h30 09h55
When Different genes tell the same story: Diversification of land plants
Khidir Hilu
Department of Biological Sciences, Virginia Tech, Blacksburg VA 24061, U.S.A.
09h55 10h20
A co-evolution model to identify evolutionarily conserved networks of amino-acids interactions in protein families
Julie Baussand
Génomique Analytique, INSERM UMRS511, Université Pierre et Marie Curie-Paris 6,91, bd de l’Hôpital, 75013 Paris, France
10h20 10h45
Comparative evolution of floral symmetry in monocots, basal and core eudicots. A morphological and phylogenetical approach
Florian Jabbour
Laboratoire Ecologie Systématique Evolution
UMR 8079 CNRS-UP11-ENGREF
Université de Paris-Sud XI Bât. 360
91405 Orsay, FRANCE
10h45 11h15
Coffee Break, Poster Session
11h15 11h40
Retroelement Phylogenomics and the root of eukaryotes
Dusan Kordis
Department of Biochemistry and Molecular Biology, Josef Stefan Institute, Ljubljana, Slovenia
11h40 12h05
Reconstructing ancestral vertebrate genomes by in silico paleogenomics: Insights into vertebrate genome evolution
Matthieu Muffato
Dyogen group, CNRS UMR8541, École Normale Supérieure, Paris, France
12h05 12h30
Proteomic and Genomic Analyses of Methanosarcina acetivorans Supports a Role for Energy Conservation Shaping Early Evolution on Earth and Possibly Mars
James Gregory Ferry
The Pennsylvania State University, University Park, Pennsylvania, 16801, USA
12h30 12h55
The genome of the nematode Pristionchus pacificus and implications for the evolution of parasitism
Ralf Sommer
Evolutionary Biology, MPI for Developmental Biology, Tübingen, Germany
12h55 14h15
LUNCH
Comparative genomics and post-genomics
Chairman: Khidir Hilu
14h15 14h40
Homeobox Evolution: Insights from Bilaterian Genomes
Thomas Butts
Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, England.
14h40 15h05
Dlx genes in the marine annelid Pomatoceros lamarckii
McDougall Carmel
Department of Zoology, Oxford.
The Gatty Marine Laboratory, University of St Andrews
15h05 15h30
Multilocus analysis of variation at nine phenylpropanoid pathway genes in Arabidopsis thaliana
Sebastian Ramos-Onsins
Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Diagonal 645. 08028 Barcelona.
15h30 15h55
Genetic and phylogenetic characterization of a novel trehalose biosynthesis bacterial gene.
Nelson Avonce
Department of Molecular Microbiology, VIB, Kasteelpark Arenberg 31, 3001 Heverlee Belgium
15h55 16h20
Detecting recombination in prokaryote genomes
Cheong Xin Chan
ARC Centre of Excellence in Bioinformatics and Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia
16h20 17h00
Coffee Break, poster session
17h00 17h30
Posters with fast presentation
17h30 17h55
P-Transposon homologous sequences in Chordates
Sylvia Hagemann
Medical University of Vienna, Austria, Center of Anatomy and Cell Biology, Division of Genome Dynamic
17h55 18h20
Tracking the evolution of alternatively spliced exons within the Dscam family
Mack Crayton
Department of Biology, Xavier University of Louisiana, New Orleans, LA 70125.
18h20 18h45
Organisation of ANTP-class homeobox genes in the lophotrochozoan Platynereis dumerilii
Jerome Hui
Department of Zoology, University of Oxford, UK
18h45 –
Reconstruction of the evolutionary history of the drosophilid genus zaprionus from molecular and morphological data
Amir Yassin
Laboratoire Evolution, Génomes et Spéciation (LEGS), CNRS, Gif-sur-Yvette, France
Dinner at Vieux Port
September 20th,
08h15 09h00
Morning Coffee and Posters viewing
Biodiversity and Systematics
Chairman: Hugues Roest Crollius
08h30 09h00
Can we use Pneumocystis fungi as markers of mammalian evolution ?
Christine Demanche
Service de Parasitologie (EA3609), Faculté de Pharmacie, Université de Lille 2, Lille, France
09h00 09h25
An approach to Mediterranean human genetic variation through STRs and Alus of the X chromosome
Josep Santamaria
Unitat dAntropologia, Dpt. de Biologia Animal, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain
09Hh25 09h50
An updated bacterial phylogeny with a focus on Aquifex
Bastien Boussau
Université de Lyon ; université Lyon 1 ; CNRS ; UMR 5558, Laboratoire de
Biométrie et Biologie Evolutive, 43 boulevard du 11 novembre 1918, Villeurbanne F-69622, France.
09h50 10h20
Posters with Fast Presentation
10h20 11h00
Coffee Break, Poster Session
11h00 11h25
Molecular phylogeny of murine rodents: systematic, timing and paleobigeographic implications
Pascale Chevret
Equipe Zoologie Moléculaire, Institut de Génomique Fonctionnelle de Lyon, ENS de Lyon, 46, allée d’Italie, 69364 Lyon cedex 07 France
11h25 11h50
On the origin and evolution of the polyploid Fragaria species based on phylogenetic analyses of Waxy and DHAR low-copy nuclear genes
Mathieu Rousseau-Gueutin
INRA-Unité de Recherche sur les Espèces fruitières, Domaine de la Grande Ferrade, 71 avenue Edouard Bourleaux – BP 81 33883 Villenave dOrnon cedex, France
11h50 12h15
Phylogeography and Conservation of a rare South African beetle, Ichnestoma stobbiai (Coleoptera: Scarabaeidae)
Ute Kryger
Department of Zoology & Entomology, University of Pretoria, Pretoria 0002, South Africa
12h15 13h35
LUNCH
Evolutionary biology concepts and Knowledges
Chairman: Ralf Sommer
13h35 14h00
Old and new concepts in EvoDevo: phylogenetic implications
Margherita Raineri
Department of Biology, University of Genoa, Viale Benedetto XV, 5 16132 Genova, Italy
14h00 14h25
Old Recapitulation of Phylogeny in Ontogeny is Still Alive, it got New Explanation in Complex Network Area
Andrezej Gecow
Institute of Paleobiology Polish Academy of Science,
00-818 Warszawa Twarda 51/55 Poland.
14h25 14h50
An introduction to evolutionary medicine
Bernard Swynghedauw
PhD, MD, FESC, Directeur de Recherches à lINSERM
Centre de Recherches cardiovasculaire de lINSERM. Hôpital Lariboisière Paris France
14h50 15h15
Evo-devo meets artificial life: insights from the evolution of simulated organisms whose development is governed by an artificial gene regulatory network
Borys Wrobel
Institute of Oceanology, Polish Academy of Sciences, Sopot 81-712, Powstańców Warszawy 55, Poland
15h15 15h40
Evolution of infectious integrations of Banana streak virus in the genome of the wild banana (Musa balbisiana)
Philippe Gayral
CIRAD BIOS – UMR BGPI, TA A-54/K, Campus international de Baillarguet, F-34398 Montpellier Cedex 5, France.
15h40 16h05
Was nitric oxide the vanguard molecule for dioxygen in biological energy conversion?
Wolfgang Nitschke
BIP/CNRS, Institut de Biologie Structurale et Microbiologie, 13402 Marseille/France
16h05 16h45
Coffee Break, Poster session
16h45 17h10
Is there a common origin between cnidarian and dinoflagellate nematocysts ?
Jung Shan Hwang
Center for Information Biology and DDBJ, National Institute of Genetics, Mishima, Japan
17h10 17h35
Life-cycle features in the survival behaviour of p53-deficient tumour cells
Katarina Erenpreisa
Latvia Biomedicine Research and Study Centre, Riga
Mathematics and Evolution
Chairman: Etienne Pardoux
17h35 18h00
Local decoding of sequences, alignment-free comparisons and trees
Gilles Didier
Institut Mathématique de Luminy, UMR 6206, Campus de Luminy, Case 907,13288 Marseille Cedex 9, France
18h00 18h30
Qst-Fst sampling distributions with genome-wide data
Judith Miller
Department of Mathematics, Georgetown University, Washington DC 20057 0001 USA
18h30 19h00
Asymptotic Behaviour of the Rate of Adaptation
Feng Yu
Department of Statistics , 1 South Parks Road, Oxford, OX1 3 TG, United Kingdom
Cocktail
September 21st,
08h15 08h45
Morning Coffee and Posters viewing
Environment and biological evolution
Chairman: Margherita Raineri
08h45 09h10
Analysis of the gene content of two Ostreococcus ecotypes to find clues on the genetic basis of their adaptation to their ecological niche
Séverine Jancek
Observatoire Océanologique de Banyuls UMR7628 ,Banyuls-sur-Mer 66, France
09h10 09h35
Genomic and gene regulatory signatures of cryptozoic adaptation in the red flour beetle Tribolium castaneum
Markus Friedrich
Department of Biological Sciences, Wayne State University, 5047 Gullen Mall, Detroit, MI 48202
09h35 10h00
Model Habitats and Model Organisms for the Study of Adaptation to Subterranean Environments
David Culver
Department of Biology, American University, 4400 Massachusetts Ave. NW, Washington, DC 20016,
10h00 10h25
Cavernicolous planthoppers (Insecta: Hemiptera: Cixiidae) from Hawaii and Australia: model systems for speleogenomics?
Hannelore Hoch
Museum für Naturkunde, Humboldt-University, Berlin, Invalidenstr. 43, D-10115 Berlin, Germany
10h25 11h05
Coffee Break, Poster Session
Phylogeny Evolution
Chairman: Markus Friedrich
11h05 11h30
Fishing for positive selection in the Tetraodon nigroviridis genome
David Enard
Département de biologie de l’Ecole Normale Supérieure, Equipe DYOGEN – CNRS UMR 8541
11h30 11h55
A phylogenetic Mixture-Model for Accomodating Heterotachy in Gene-Sequence Evolution
Andrew Meade
The University of Reading, Whiteknights, PO Box 217, Reading, Berkshire, RG6 6AH,
United Kingdom
11h55 12h20
Accelerated evolution of genes of recent origin
Mar Alba
Municipal Institute of Medical Research Foundation, Pompeu Fabra University, Barcelona
12h20 12h45
Darwins Dream: Benchmarking Multiparametric Phylogenetic Trees
Sohan Modak
Institute of Genomics and Integrative Biology
Mall Road, Delhi 110007, India
12h45 14h15
LUNCH
Evolution of complex traits
Chairman: Bernard Swynghedauw
14h15 14h40
The developmental events in sponge: the fate of larval flagellated cells tarced by specific antibodies during metamorphosis of Halisarca dujardini (Demospongiae, Halisarcida)
Tatiana Shaposhnikova
Saint Petersburg State University, Saint Petersburg 199034, Russia
14h40 15h05
Recent Evolution of Fully Modern Spoken Language
Robert McCarthy
Florida Atlantic University., Brown University
15h05 15h30
The evolution of the neural bases of human language and cognition
Philip Lieberman
Cognitive and Linguistic Sciences, Brown University, Providence RI 02912-1978, USA
15h30 15h55
Amphioxus Metamorphosis and the Origin of the Thyroid Hormone Signalling Pathway
Mathilde Paris
Institut de Génomique Fonctionnelle de Lyon, CNRS, INRA, Université Lyon 1, Ecole Normale Supérieure de Lyon, IFR128 Lyon Biosciences, 46 allée d’Italie, 69364 Lyon Cedex 07, France
15h55 16h40
Break Coffee, poster session
16h40 17h05
Metazoan steroidogenesis: one or many stories?
Gabriel Markov
UMR 5242 du CNRS Institut de Génomique Fonctionnelle de Lyon – Equipe de Zoologie Moléculaire. Université de Lyon INRA . IFR 128 BioSciences Lyon-Gerland, Ecole Normale Supérieure de Lyon, France
17h05 17h30
The persistence of histone H3K9 methylation in heterochromatin during evolution and the transformations of the responsible enzyme
Veiko Krauss
Department of Genetics, Institute for Biology II, University of Leipzig, Johannisallee 21-23, 04103 Leipzig, Germany
17h30 17h55
The main lines of the foraminiferal evolution through the time (Protista).
Valeria Mikhalevich
Zoological Institute Russian Academy of Sciences, Universitetskaya nab., 1, 199134, St. Petersburg, Russia
17h55 18h20
The body plan of Hydra is not a blind sac but a tube
Hiroshi Shimizu
National Institute of Genetics, Mishima, Japan
Posters with Fast Presentation
Different phylogeographic patterns in widespread corvid birds revealed by mitochondrial DNA sequences
Elisabeth Haring
Museum of Natural History Vienna, 1st Zoological Department, Burgring 7, A-1010 Vienna, Austria.
A new tool for plant phylogenetics
Michaela Markova
Department of Plant Developmental Genetics – Institute of Biophysics – Kralovopolska 135 – 61265 Brno – CZECH REPUBLIC
Distribution, transposition and evolution of gypsy-group retrotransposons in different species of Drosophila
Alexander Kim
Department of Genetics, M.V.Lomonosov Moscow State University
Evolution of passerine bird signal system
Irina Beme
Department of Vertebrate Zoology, Biological Faculty,
Lomonosov Moscow State University,
Vorobjevy Gory, Moscow, 119992, Russia.
Structural organization of the DIP1 gene controlling transposition of gypsy in phylogenetically different species of Drosophila
Lidia Nefedova
Department of Genetics, Moscow State University
Genetic analysis of the cyprinid fish Garra barreimiae from cave and surface populations in Oman
Luise Kruckenhauser
Museum of Natural History Vienna, Burgring 7, A-1010 Vienna, Austria
Conservation, functional shifts and elaboration of the EDA pathway in vertebrates
Sophie Pantalacci
Molecular Zoology Team, Institut de Génomique Fonctionnelle de Lyon, UMR 5242 du CNRS, INRA, Université de Lyon 1, Ecole Normale Supérieure de Lyon, IFR128 Lyon Biosciences, 46 allée d’Italie, 69364 Lyon Cedex 07, France.
Fitness Landscape of AB1P target sites in year
Ville Mustonen
Institut für Theoretische Physik, Universität zu Köln, Zülpicherstr. 77, 50937 Köln, Germany
The Ursidae phylogeny on the combined analysis of nuclear genes
Marie Pagès
Paleogenetics and Molecular Evolution Team, Institute of Functional Genomics, University of Lyon, F-69003, France; INRA, CNRS, University of Lyon 1, Ecole Normale Supérieure, F-69364, France
Sex Determination and Sex Shromosomes Evolution in Selene Otites
Martina Hruba
Laboratory of Plant Developmental Genetics, Institute of Biophysics, v.v.i.,
Academy of Sciences of the Czech Republic, Královopolská 135, 612 65 Brno
Progress in Assembling the Angiosperm Tree of Life
Khidir W. Hilu
Department of Biological Sciences, Virginia Tech, Blacksburg VA 24061, U.S.A.
An integrated approach for the comparative analysis of a multigene family: The nicotianamine synthase genes of barley
Dragan Perovic
Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, D-06466 Gatersleben, Germany
Posters
Ontogeny of Lightiella magdalenina (Crustacea, Cephalocarida)
Alberto Addis
Department of Zoology and Evolutionary Genetics, University of Sassari, Italy.
Specific primers for the amplification of mitochondrial cox1 partial region to detect phylogenetic relationships among siblings of the Monocelis lineata complex from Mediterranean and Atlantic
Daria Sanna
Dipartimento di Zoologia e Genetica Evoluzionistica, University of Sassari,
Via Muroni 25, 07100 Sassari, Italy
Denaturing High Performance Liquid Chromatography (D-HPLC) analysis to infer polygyny in Syngnathidae: implication for Syngnathus abaster mating system.
Francesca Biagi
Dipartimento di Zoologia e Genetica Evoluzionistica, University of Sassari,
Via Muroni 25, 07100 Sassari, Italy
Specific primers for the amplification of mitochondrial cox1 partial region to detect phylogenetic relationships among siblings of the Monocelis lineata complex from Mediterranean and Atlantic
Tiziana Lai
Dipartimento di Zoologia e Genetica Evoluzionistica, University of Sassari,
Via Muroni 25, 07100 Sassari, Italy
Comparative phylogeography of endemic cyprinids in the Iberian Peninsula: definition of ichthyogeographic areas
Natacha Mesquita
Universidade de Lisboa, Faculdade de Ciências, Centro de Biologia Ambiental, Campo Grande, Bloco C2 3° Piso, 1749-016 Lisboa, Portugal; Universidade de Lisboa, Museu Bocage, Museu Nacional de História Natural, Rua da Escola Politécnica 58, 1269-102 Lisboa, Portugal.
The evolution of the genus Silene
Elleni Michu
Department of Plant Developmental Genetics Institute of Biophysics Kralovopolska 135 61265 Brno CZECH REPUBLIC
Horizontal gene transfer from the bacterial pathogen ralstonia solancacerum to the plant genome of silene latifolia
Martina Talianova
Department of Plant Developmental Genetics Institute of Biophysics Kralovopolska 135 61265 Brno CZECH REPUBLIC
P-Transposons in Ciona intestinalis
Stephanie Kimbacher
Medical University of Vienna, Austria, Center of Anatomy and Cell Biology, Division of Genome Dynamics
Is gene YCF 45 a remnant of a plastid in Trypanosoma brucei?
Jiri Tyc
Faculty of Biology, University of South Bohemia, České Budějovice, Czech Republic
Statistical test for conserved genomic regions
Simona Grusea
MEG (EA 3781) and LATP (UMR 6632)
A Model for Horizontal Gene Transfers
Stéphanie Léocard
LATP, CMI, 39, rue F. Joliot Curie, 13453 Marseille cedex 13, France
Conceptual bases for quantifying the role of the environment on gene evolution: the participation of positive selection and neutral evolution
Anthony Levasseur
Phylogenomics Laboratory. EA 3781 Evolution Biologique Université de Provence, Case 36, Pl. V. Hugo, 13331 Marseille Cedex 03. France
Differential expression of ribosomal 18S and 28S RNA paralog genes from the chaetognath Spadella cephaloptera
Roxane-Marie Barthélémy
Biodiversity and environment, case 18, 3 Place V. Hugo, Université de Provence, 13331 Marseille cedex 3, France
Comparative genomics of rhizobia
Géraldine Pascal
Laboratoire des Interactions Plantes Micro-organismes (LIPM), UMR CNRS-INRA 2594/441, Toulouse , France
A phylogenomic approach to resolving the organismal phylogeny in prokaryotes: the case of the Rickettsiae
Vicky Merhej
Unité des Rickettsies, CNRS UMR 6020, IFR 48, Faculté de Médecine, Université de la Méditerranée, 27 Blvd Jean Moulin, 13385 Marseille Cedex 5, France
C.A.S.S.I.O.P.E.: System, process and analyse of one region
Virginie Lopez
Phylogenomics Laboratory. EA 3781 EB (Evolution Biologique), Université de Provence, Case 19, Pl. V. Hugo, 13331
A new member of bilateria : directed locomotion of sea anemone
Hiroshi Shimizu
National Institute of Genetics, Mishima, Japan.
Physiological and biochemical diversity of Synechocystis PCC 6803 and Magnetospirillum gryphyswaldense grown in alkaline media .
Ioan Ardelean
Institue of Biology, Romanian Academy, Centre of Microbiology
Study of different Egyptian populations
Morgane Odabachian
Phylogenomics Laboratory. EA 3781 EB (Evolution Biologique), Université de Provence, Case 19, Pl. V. Hugo, 13331
Role of hitch hiking effect on genome evolution
Elodie Darbo
Phylogenomics Laboratory. EA 3781 EB (Evolution Biologique), Université de Provence, Case 19, Pl. V. Hugo, 13331